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Journal Article

Paterson, G, Ahmed F, Faulwetter S, Ball A, Dinley J, Hawkins L, Sykes D, Arvanitidis C. Submitted. The pros and cons of using micro-computed tomography in gross and micro-anatomical assessments of polychaetous annelids. Memoirs of the Victoria Museum.

Pafilis, E, Frankhild SP, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Arvanitidis C, Jensen LJ. 2013. The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text. PLOS One. 8(6):e65390.

Peck, MA, Archambault B, Arvanitidis C, Butenschön M, Chatzinikolaou E, Cucco A, Domenici P, Gasche L, Fernandes JA, Huebert KB et al.. 2013. Understanding and Projecting Changes in the Distribution and Productivity of Living Marine Resources: A Review of Modelling Approaches. ICES Journal of Marine Science. In press

Polymenakou, PN, Mandalakis M. 2013. Assessing the short-term variability of bacterial composition in background aerosols of the Eastern Mediterranean during a rapid change of meteorological conditions. Aerobiologia. 29(3):429-441.

Polymenakou, PN. 2012. Atmosphere: a source of pathogenic or beneficial microbes? Atmosphere. 3:87-102.

Polymenakou, PN. 2012. Atmosphere: a source of pathogenic or beneficial microbes? Atmosphere. 3:87-102.

Papanikolaou, N, Pafilis E, Nikolaou S, Ouzounis CA, Iliopoulos I, Promponas VJ. 2011. BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinformatics. 27(23):3327-3328.

Paibomesai, MI, Moghadam HK, Ferguson MM, Danzmann RG. 2010. Clock genes and their genomic distributions in three species of salmonid fishes: Associations with genes regulating sexual maturation and cell cycling. BMC RESEARCH NOTES . 3:215.

Papageorgiou, N, Kalantzi I, Karakassis I. 2010. Effects of fish farming on the biological and geochemical properties of muddy and sandy sediments in the Mediterranean Sea. Marine Environmental Research. 69(5):326-336. Abstract

Pafilis, E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R. 2009. Reflect: augmented browsing for the life scientist. Nature Biotechnology. 27(6):508-510.

Pakaki, V, Magoulas A, Kasapidis P. 2009. New polymorphic microsatellite loci for population studies in the European anchovy, Engraulis encrasicolus (L.). Molecular Ecology Resources. 9:1406-1409. Abstract

Papageorgiou, N, Sigala K, Karakassis I. 2009. Changes of macrofaunal functional composition at sedimentary habitats in the vicinity of fish farms. Estuarine, Coastal and Shelf Science. 83(4):561-568. Abstract

Pavlopoulos, GA, Pafilis E, Kuhn M, Hooper SD, Schneider R. 2009. OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics. 25(7):977-978.

Polymenakou, PN, Lampadariou N, Mandalakis M, Tselepides A. 2009. Phylogenetic diversity of sediment bacteria from the southern Cretan margin, Eastern Mediterranean Sea. Syst Appl Microbiol. 32:17-26. Abstract

Patterson, DJ, Faulwetter S, Shipunov AB. 2008. Principles for a names-based cyberinfrastructure to serve all of biology. Zootaxa. 1950:153-163.

Pavlopoulos, GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. 2008. Arena3D: visualization of biological networks in 3D. BMC Systems Biology. 2(1):104.

Petalidis, LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP. 2008. Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Molecular Cancer Therapeutics. 7(5):1013-1024.

Polymenakou, PN, Lampadariou N, Tselepides A. 2008. Exo-enzymatic activities and organic matter properties in deep-sea canyon and slope systems off the southern Cretan margin. Deep-Sea Research Part I. 55:1318-1329.

Polymenakou, PN, Mandalakis M, Stephanou EG, Tselepides A. 2008. Particle size distribution of airborne microorganisms and pathogens during an Intense African dust event in the eastern Mediterranean. Environ Health Perspect. 116:292-6. Abstract

Poulakakis, N, Antoniou A, Mantziou G, Skartsi T, Vasilakis D, Elorriaga J, de la Puente J, Gavashelishvili A, Ghasabyan M, Katzner T et al.. 2008. Population structure, diversity and phylogeography in the near threatened Eurasian Black Vulture Aegypius monachus (Falconiformes; Accipitridae) in Europe: insights from microsatellite and mtDNA variation. Biological Journal of Linnean Society. 95:859-872. Abstract

Poulos, S, Dounas C, Alexandrakis G, Koulouri P, Drakopoulos P. 2008. Trace metal distribution in sediments of northern continental shelf of Crete Island, Eastern Mediterranean. Environmental Geology. 58(4):843-857. Abstract

Papageorgiou, N, Moreno M, Marin V, Baiardo S, Arvanitidis C, Fabiano M, Eleftheriou A. 2007. Interrelationships of bacteria, meiofauna and macrofauna in a Mediterranean sedimentary beach (Maremma Park, NW Italy). Helgoland Marine Research. 61(1):31-42. Abstract

Polymenakou, PN, Fragkioudaki G, Tselepides A. 2007. Bacterial and organic matter distribution in the sediments of the Thracian Sea (NE Aegean). Continental Shelf Research. 27:2187-2197.

Polymenakou, PN, Stephanou EG, Tselepides A, Bertilsson S. 2007. Organic matter preservation and microbial community accumulations in deep-hypersaline anoxic basins. Geomicrobiology Journal. 24:19-29.

Psochiou, E, Sarropoulou E, Mamuris Z, Moutou KA. 2007. Sequence analysis and tissue expression pattern of Sparus aurata chymotrypsinogens and trypsinogen. Comp Biochem Physiol B Biochem Mol Biol. 147:367-77. Abstract