Evangelos Pafilis

Faulwetter, S, Markantonatou V, Pavloudi C, Papageorgiou N, Keklikoglou K, Chatzinikolaou E, Pafilis E, Chatzigeorgiou G, Vasileiadou A, Dailianis T et al..  Submitted.  Polytraits: A database on biological traits of polychaetes. Biodiversity Data Journal.

Hardisty, A, Roberts D, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N et al..  2013.  A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology. 13:16.

Pafilis, E, Frankhild SP, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Arvanitidis C, Jensen LJ.  2013.  The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text. PLOS One. 8(6):e65390.

Arvanitidis, C, Faulwetter S, Chatzigeorgiou G, Penev L, Bankí O, Dailianis T, Pafilis E, Kouratoras M, Chatzinikolaou E, Fanini L et al..  2011.  Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT. Zookeys. 150:211–229.

Papanikolaou, N, Pafilis E, Nikolaou S, Ouzounis CA, Iliopoulos I, Promponas VJ.  2011.  BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinformatics. 27(23):3327-3328.

Katayama, T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun H-W, Aerts J et al..  2010.  The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics. 1(1):8.

O’Donoghue, SI, Horn H, Pafilis E, Haag S, Kuhn M, Satagopam VP, Schneider R, Jensen LJ.  2010.  Reflect: A practical approach to web semantics. Web Semantics: Science, Services and Agents on the World Wide Web. 8(2-3):182-189.

Pafilis, E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R.  2009.  Reflect: augmented browsing for the life scientist. Nature Biotechnology. 27(6):508-510.

Pavlopoulos, GA, Pafilis E, Kuhn M, Hooper SD, Schneider R.  2009.  OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics. 25(7):977-978.

Pavlopoulos, GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R.  2008.  Arena3D: visualization of biological networks in 3D. BMC Systems Biology. 2(1):104.

Stockinger, H, Attwood T, Chohan SN, Cote R, Cudre-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E et al..  2008.  Experience using web services for biological sequence analysis. Briefings in Bioinformatics. 9(6):493-505.

Barbosa-Silva, A, Ortega JM, Pafilis E, Schneider R.  2007.  Development of SRS.php, a SOAP-based library for data acquisition from integrated biological databases.. Genetics And Molecular Research. 6(4):1142-1150.

Pafilis, E.  2009.  Web-based data integration and text mining techniques to accelerate biomedical research (PhD). Structural and Computational Biology, EMBL.

Pafilis, E.  2003.  Visualisation Mechanisms supporting Genotype Analysis (MRes). Dept of Computing Science, University of Glasgow, UK.

Pafilis, E, Brown NP, Horn H.  Submitted.  Automated Annotation of Scientific Documents: Increasing Access to Biological Knowledge. Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data.

Hunt, E, Pafilis E, Tulloch I, Wilson J.  2004.  Index-Driven XML Data Integration to Support Functional Genomics. International Workshop on Data Integration in Life Sciences, DILS'04. LNCS 2994:95-109.

Pafilis, E, Frankild S, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Arvanitidis C, Jensen LJ.  Submitted.  ENVIRONMENTS: identification of environment descriptive terms in text. The 15th Genomic Standards Consortium, Washington DC (U.S.A.).