Bibliography

Amemiya, CT, Alfoldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N et al..  2013.  The African coelacanth genome provides insights into tetrapod evolution. Nature. 496:311-6. Abstract

Smith, JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE et al..  2013.  Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet. 45:415-21,421e1-2. Abstract

Hardisty, A, Roberts D, Alonso E, Arvanitidis C, Badia RM, Basset A, Blonda P, Castelli D, Culham A, Glockner FO et al..  2013.  A call to forge biodiversity links. Nature. 502:170-171.

Stoev, P, Komericki A, Akkari N, Liu S, Xin Z, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D et al..  2013.  Eupolybothrus cavernicolus Komericki & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data.. Biodiversity Data Journal. 1:e1013.

Wiegert, C, Mandalakis M, Knowles T, Polymenakou PN, Aeppli C, Macháčková J, Holmstrand H, Evershed RP, Pancost RD, Gustafsson O.  2013.  Carbon and chlorine isotope fractionation during microbial degradation of tetra- and trichloroethene. Environmental Science and Technology. 47:6449-6456.

Hardisty, A, Roberts D, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N et al..  2013.  A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology. 13:16.

Peck, MA, Archambault B, Arvanitidis C, Butenschön M, Chatzinikolaou E, Cucco A, Domenici P, Gasche L, Fernandes JA, Huebert KB et al..  2013.  Understanding and Projecting Changes in the Distribution and Productivity of Living Marine Resources: A Review of Modelling Approaches. ICES Journal of Marine Science. In press

Boyen, C, Heip C, Cury P, Baisnée P-F, Brownlee C, Tessmar-Raible K, Allen I, Arvanitidis C, Austen M, Bolhuis H et al..  2012.  EuroMarine Research Strategy Report. EuroMarine Research Strategy Report - Deliverable 3.2. Seventh Framework Programme Project EuroMarine. :1-36. Abstract

Gontikaki, E, Polymenakou PN, Thorton B, E. NB, Black K, Tselepides A, Witte U.  2012.  Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29(648-655)

Wright, AE, Moghadam HK, Mank J.  2012.  Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome. GENETICS . 192:1433-1445.

Moghadam, HK, Wright AE, Pointer M, Mank J.  2012.  W chromosome expression responds to female-specific selection. THE PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, USA . 109:8207-8211.

Timusk, ER, Ferguson MM, Moghadam HK, Norman J, Wilson CC, Danzmann RG.  2011.  Genome evolution in the fish family Salmonidae: Generation of a Brook charr genetic map and comparisons among chars (Arctic char and Brook char) with Rainbow trout. BMC GENETICS . 12:68.

Katayama, T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun H-W, Aerts J et al..  2010.  The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics. 1(1):8.

Wringe, BW, Devlin RH, Ferguson MM, Moghadam HK, Sakhrani D, Danzmann RG.  2010.  Growth-related quantitative trait locus regions in Rainbow trout (Oncorhynchus mykiss). BMC GENETICS . 11:63.

Kochzius, M, Seidel C, Antoniou A, Bolta KS, Campo D, Cariani A, Garcia Vazquez E, Hauschild J, Hervet C, Hjörleifsdottir S et al..  2010.  Identifying fishes through DNA barcodes and microarrays. PloS One . 5(9):e12620. Abstract

Oulas, A, Poirazi P.  2010.  Methods in Molecular Biology - MicroRNA and Cancer - Utilization of SSCprofiler to Predict a New miRNA Gene. 676:243-252.

Oulas, A, Karathanasis N, Poirazi P.  2010.  Methods in Molecular BiologyMicroRNA and CancerComputational Identification of miRNAs Involved in Cancer. 676:23-41.

Polymenakou, PN, Mandalakis M, Wijker R, Hofstetter T.  2010.  Microbial degradation of dinitrotoluenes (2,4- and 2,6-DNTs) by mixed soil cultures for the determination of isotopic fractionation. 3rd National Mikrobiokosmos Conference.

Somerfield, PJ, Arvanitidis C, Faulwetter S, Chatzigeorgiou G, Vasileiadou A, Amouroux JM, Anisimova N, Cochrane SJ, Craeymeersch J, Dahle S et al..  2009.  Assessing evidence for random assembly of marine benthic communities from regional species pools. Marine Ecology Progress Series. 382:279-286.

Arvanitidis, C, Somerfield PJ, Rumohr H, Faulwetter S, Valavanis V, Vasileiadou A, Chatzigeorgiou G, Vanden Berghe E, Vanaverbeke J, Labrune C et al..  2009.  Biological geography of the European seas: results from the MacroBen database. Marine Ecology Progress Series. 382:265-278.

Grémare, A, Labrune C, Vanden Berghe E, Amouroux JM, Bachelet G, Zettler ML, Vanaverbeke J, Fleischer D, Bigot L, Maire O et al..  2009.  Comparison of the performances of two biotic indices based on the MacroBen database. Marine Ecology Progress Series. 382:297-311.

RENAUD, E, WEBB TJ, BjØrgesaeter A, Karakassis I, Kedra M, Kendall MA, Labrune C, Lampadariou N, Somerfield PJ, Wlodarska-Kowalczuk M et al..  2009.  Continental-scale patterns in benthic invertebrate diversity: insights from the MacroBen database. Marine Ecology Progress Series. 382:239-252.

Vanden Berghe, E, Claus S, Appeltans W, Faulwetter S, Arvanitidis C, Somerfield PJ, Aleffi I, Amouroux JM, Anisimova N, Bachelet G et al..  2009.  MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe. Marine Ecology Progress Series. 382:225-238.

WEBB, TJ, Aleffi I, Amouroux JM, Bachelet G, Degraer S, Dounas C, Fleischer D, Grémare A, Herrmann M, Hummel H et al..  2009.  Macroecology of the European soft sediment benthos: insights from the MacroBen database. Marine Ecology Progress Series. 382:287–296.

Petalidis, LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP.  2008.  Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Molecular Cancer Therapeutics. 7(5):1013-1024.